Publications and Preprints

Journal Papers

  1. Spears, Samuel DJ; Abdulle, Yusuf F; Lester, Thomas; Torii, Ryo; Kalaskar, Deepak M; Sharma, Nikhil; (2024). Understanding neck collar preferences and user experiences in motor neuron disease: A survey-based study. Disability and Health Journal, 101585. Elsevier.

  2. Spears, Samuel DJ; Abdulle, Yusuf F; Korovilas, Dionisios; Torii, Ryo; Kalaskar, Deepak M; Sharma, Nikhil; (2023). Neck collar assessment for people living with motor neuron disease: Are current outcome measures suitable?. Interactive journal of medical research, 12.0(1.0), e43274. JMIR Publications Inc., Toronto, Canada.

Conference Papers

  1. Kim, Yunsoo; Wu, Jinge; Abdulle, Yusuf; Gao, Yue; Wu, Honghan; (2024). Human-in-the-Loop Chest X-Ray Diagnosis: Enhancing Large Multimodal Models with Eye Fixation Inputs. International Workshop on Trustworthy Artificial Intelligence for Healthcare, 66-80. Springer Nature Switzerland Cham.

  2. Kim, Yunsoo; Wu, Jinge; Abdulle, Yusuf; Gao, Yue; Wu, Honghan; (2024). Enhancing human-computer interaction in chest x-ray analysis using vision and language model with eye gaze patterns. International Conference on Medical Image Computing and Computer-Assisted Intervention, 184-194. Springer Nature Switzerland Cham.

  3. Groves, Emily; Wang, Minhong; Abdulle, Yusuf; Kunz, Holger; Hoelscher-Obermaier, Jason; Wu, Ronin; Wu, Honghan; (2023). Benchmarking and Analyzing In-context Learning, Fine-tuning and Supervised Learning for Biomedical Knowledge Curation: a focused study on chemical entities of biological interest. LLM+KG@VLDB’24.

  4. Budhdeo, S; Abdulle Y,; Sharma, N; Cosco, T (2023); Meta-analysis of cerebrospinal fluid immune markers in frontotemporal dementia patients compared to healthy controls. European Journal of Neurology.

  5. Budhdeo, S; Abdulle Y,; Kaczmarczyk, I; Sharma, N (2023); Using a PET atlas to probe neurotransmitter-disease associations in Mild Cognitive Impairment and Alzheimer’s disease. European Journal of Neurology.

Preprints

  1. Kim, Yunsoo; Abdulle, Yusuf; Wu, Honghan; (2025). BioHopR: A Benchmark for Multi-Hop, Multi-Answer Reasoning in Biomedical Domain. arXiv preprint arXiv:2505.22240.

  2. Kim, Yunsoo; Wu, Jinge; Abdulle, Yusuf; Wu, Honghan; (2024). MedExQA: Medical Question Answering Benchmark with Multiple Explanations. arXiv preprint arXiv:2406.06331.

  3. Groves, Emily; Wang, Minhong; Abdulle, Yusuf; Kunz, Holger; Hoelscher-Obermaier, Jason; Wu, Ronin; Wu, Honghan; (2023). Benchmarking and Analyzing In-context Learning, Fine-tuning and Supervised Learning for Biomedical Knowledge Curation: a focused study on chemical entities of biological interest. arXiv preprint arXiv:2312.12989.

  4. Budhdeo, Sanjay; Zhang, Joe; Abdulle, Yusuf; Agapow, Paul M; McKechnie, Douglas GJ; Archer, Matt; Shah, Viraj; Forte, Eugenia; Noori, Ayush; Zitnik, Marinka; (2023). Scoping review of knowledge graph applications in biomedical and healthcare sciences. medRxiv, 2023.12.13.23299844. Cold Spring Harbor Laboratory Press.


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